Simulating the Universe with a zBox 192
An anonymous reader writes "Scientists at the University of Zurich predict that our galaxy is filled with a quadrillion clouds of dark matter with the mass of the Earth and size of the
solar system. The results in this weeks journal Nature, also covered in Astronomy magazine, were made using a six month calculation on hundreds of processors of a self-built supercomputer, the zBox. This novel machine is a high density cube of processors cooled by a central airflow system. I like the initial back of an envelope design. Apparently, one of these ghostly dark matter haloes passes through the solar system every few thousand years leaving a trail of high energy gamma ray photons."
Hmm (Score:4, Funny)
Re:Hmm (Score:2)
Re:Hmm (Score:2)
Re:Hmm (Score:2)
~phil
Re:Hmm (Score:2)
Let me guess (Score:4, Funny)
Re:Let me guess (Score:1)
Nope, but the whole thing comes in a nice chocolate-egg with graphical assembly instructions.
Re:Let me guess (Score:1)
Do not look directly into the zBox unless you are the most important person in the universe.
Actually... (Score:1)
Re:Let me guess (Score:2)
I don't understand... (Score:1, Interesting)
Re:I don't understand... (Score:5, Informative)
With stellar bodies it's much more easy. The number of stellar bodies you need for a prediction is much smaller, the bodies themself can be considered almost constant for the whole calculation etc.pp. With the number crunching capacity of today's weather prediction centers you can simulate whole galaxies (if you consider stars constant, which they mainly are for about 10mio to 10bio years, depending on their mass). With the differences between your model and the measured reality you can spot elements you didn't simulate yet and add them to your model. The swiss team now was simulating clouds of about the mass of the earth and the size of the solar system and found that those added to the stellar simulation made a quite good fit to the measured data.
Re:I don't understand... (Score:3, Interesting)
Basically, I want a program that simulates chemical reactions. If I have a bunch of molecules mixed together, and I add another mixture, what will happen, on the atomic level?
We have SPICE for electrical circuits. Why not something for chemical reactions?
Re:I don't understand... (Score:2, Informative)
Here is a GPL program, there are plenty of others (commercial and FOSS):
http://ruby.chemie.uni-freiburg.de/~martin/chemto
Re:I don't understand... (Score:4, Informative)
Finally, you'd have something which would prepare an "answer" to each problem by waiting for a reasonable amount of precipitate to settle, or measuring pH, or simulating a gas chromatograph of the contents of the beaker.
Other helpful things would be crystallization and such. I would think that if you could simulate the physical laws and properties at a sufficiently low level, most things would arise automatically, but IANAC.
Re:I don't understand... (Score:2)
Re:I don't understand... (Score:2, Informative)
This is utter nonsense.
Weather models are fluid models, not particle models like the N-body simulation described here. They are quite different, and require different computational approaches. Both are numerically intensive, however.
Difference is the time frame I'd guess (Score:2, Informative)
It's the difference between saying it does rain, and when it will. On this scale they are just explaining a phenomena that can happen every so often, in a stellar sense. I'm guessing this eases the difficulty of computation from what would be necessary to predict the number of years before the next occurrence.
The new pentium? (Score:1)
zBox taking a nap (Score:5, Funny)
Re:zBox taking a nap (Score:1, Informative)
Karma whore time - here is the "scoop" (Score:3, Interesting)
Our in-house designed (Joachim Stadel & Ben Moore 2003), massively parallel supercomputer for running our cosmological N-body simulations. This machine consists of 288 AMD Athlon-MP 2200+ (1.8 GHz) CPUs within a few cubic meters. Under load it produces about 45 kW of heat, about equivalent to 45 electric hair dryers operating continuously! This amount of heat, combined with the extremely high density necessitated a new design for efficient cooling. The 144 nodes (2 CPUs per node) are connected using an SCI fast interconnect supplied by Dolphin in a 12x12 2-dimensional torus. The layout of the machine is ring-like, thereby allowing very short "ribbon" cables to be used between the nodes. This fast interconnect network attains a peak bisection bandwidth of 96 Gbits/sec, with a node-node write/read latency as low as 1.5/3.5 microseconds. Additionally the zBox has 11.5 TBytes of disk (80 GBytes/node) and 3 Gbits/s I/O bandwidth to a frontend server with 7 TB of RAID-5 storage. This is among the fastest parallel computers in the world! At "first light" it ranked in the top 100, but the technology advances quickly. (see top500, June 2003: Rank 144) (see top500, November 2003: Rank 276)
We greatly acknowledge the aid of the Physics Mechanical Workshop at the University of Zurich for: 1) turning the "napkin-sketch" into a proper CAD/CAM design of the machine; 2) providing numerous suggestions which improved the detailed design; 3) providing a gigantic room for the construction of the boards; 4) and, well, building the thing! We thank the companies of Dolphin (dolphinics.com) for supplying the high speed network and COBOLT Netservices for supplying the majority of parts. We would like to especially thank the individuals: Doug Potter and Simen Timian Thoresen for their great help in setting up the linux kernel and root file system, getting netbooting to work correctly, and resolving several operating system related problems. Finally we thank all who helped in the construction of the zBox (assembly of boards, etc), Tracy Ewen, Juerg Diemand, Chiara Mastropietro, Tobias Kaufman
Re:Karma whore time - here is the "scoop" (Score:1, Funny)
Re:Karma whore time - here is the "scoop" (Score:1)
Re:Karma whore time - here is the "scoop" (Score:2)
What would happen if you got a beowulf cluster of zBoxes and had an infinite number of monkeys looking for porn on them. Could you slashdot Slashdot?
Just great... (Score:5, Funny)
Chip H.
Read the entire paper: astro-ph 0501589 (Score:5, Informative)
http://xxx.lanl.gov/abs/astro-ph/0501589
I read the paper quickly. The authors have to come up with a model which has virtually no observable consequences (otherwise, we would have seen this source of matter by now), but which can also be tested experimentally in the not-too-distant-future (or else it wouldn't be science). They predict that some of the cosmic-ray shower telescopes may be able to detect the little cloudlets of dark matter. We'll see.
Re:Read the entire paper: astro-ph 0501589 (Score:2, Funny)
Only if we can shed some light on the matter.
Re:Read the entire paper: astro-ph 0501589 (Score:2)
There are plenty of events and areas of study which aren't directly experimentally verifiable but which are considered science. Like evolutionary biology and big bang cosmology. Science is not as easy to define as most people (including most
Re:Read the entire paper: astro-ph 0501589 (Score:3, Insightful)
Both of which contain some testable statements (e.g. in cosmology, inflation predicts certain properties in the microwave background on specific angular scales), and some untestable statements. Scientists (ought to) ignore the latter.
Re:Read the entire paper: astro-ph 0501589 (Score:2)
I'm a practicing scientist and find philosophy of science both interesting and irritating. It's interesting (and important) because questions like, "What makes a good explanation?" aren't quite part of science but still need to be asked. It's irritating because philosphers are by-and-large such complete and utter wankers.
--Tom
Dark matter passing through the solar system (Score:2, Interesting)
Re:Dark matter passing through the solar system (Score:5, Interesting)
It'd be interesting if these things could be tied to mass extinctions, but these occur much more rarely than every few thousand years. And unless these clouds can account for high levels of iridium, shocked quartz, melt glass, and a hundred-mile impact crater in Mexico, it's not terribly likely they account for the dinosaur extinction.
Re:Dark matter passing through the solar system (Score:3, Funny)
Re:Dark matter passing through the solar system (Score:3, Funny)
Re:Dark matter passing through the solar system (Score:1)
Re:Dark matter passing through the solar system (Score:2)
Much more likely reasons for global warming than other theories.
Re:Dark matter passing through the solar system (Score:2)
Re:Dark matter passing through the solar system (Score:1)
Have they taken the next step and hypothesized that such an event could account for major climate changes? Like the event that killed off the dinosaurs?
Well ... asteroids don't give off a lot of light :)
Is there any reason why dark matter has to be exotic? My layman's instinct would be that for every star we see in the sky, there must be a large number of jupiter-sized balls of gas and debris that never managed to accumulate enough mass to ignite. Would we even be able to detect these or get an esti
Re:Dark matter passing through the solar system (Score:2, Interesting)
Re:Dark matter passing through the solar system (Score:2)
Opportunity (Score:1, Funny)
Or maybe they could use that supercomputer to calculate how much fuel it would take to launch these dreaded things into the sun.
Well... it's just a thought.
Photo Story (Score:3, Informative)
The 3D temperature monitor is really cool.
Where's my jet pack? (Score:2)
Actually, where's my BOINC-ready space heater appliance?
Mirror (Score:5, Informative)
http://rufus.hackish.org/~rufus/mirror/krone.phys
For some reason .... (Score:5, Funny)
Re:For some reason .... (Score:1)
ObYes,but (Score:2)
Re:ObYes,but (Score:1, Funny)
Re:ObYes,but (Score:2)
that sounds so Zeta..
I was wondering what the power supply would be... (Score:3, Funny)
"and had sufficient forced air through the heat exchangers to transport the heat from a small car out of this small room."
Suprising.
Eggheads, What do they know? (Score:1, Funny)
theoretical background (Score:5, Insightful)
The reason I'm interested is that a non-neutral charge distribution would tend to attract the outer part of the galaxy towards the centre more than would be expected from gravity alone, which is (simplistically) the evidence for dark matter / energy.
Re:theoretical background (Score:3, Informative)
No. There's no net charge. If one developed between the sun and the solar wind, the solar wind would fall straight back in.
A good primer on dark energy can be found here [caltech.edu]
Re:theoretical background (Score:2)
No. There's no net charge. If one developed between the sun and the solar wind, the solar wind would fall straight back in.
I have to say that that does not follow. Whether the particles fell back in would depend on their initial velocity and on the total charge of the sun. Do you have any other reason for saying that there is no net charge?
Re:theoretical background (Score:2)
Absolutely. However, the only force currently causing them to accelerate towards the sun (that is, slow down) is gravity. If there were a net charge between the sun and the solar wind, there would also be an electromagnetic effect. This would be many orders of magnitude greater than the gravitational component. Observation of the solar wind shows that this is not the case. (If it were the case, t
Re:theoretical background (Score:1)
The particles propagate (acceleration mechanism still unknown) into a dynamic system that is so totally unknown it's not even funny. We have no idea at all how the low corona works, what the fields are (only theoretical estimates with large error bars), plasma interactions (many of which are probably not even on our charts), etc... The High corona is no exception. Interplanetary spac
Interesting, gravity sucks not (Score:2)
AMD does it again... (Score:3, Funny)
Re:AMD does it again... (Score:2)
I've never really had a stability problem with Windows NT, 2000 or XP. Good hardware with good drivers reduces or nearly eliminate these problems.
Re:AMD does it again... (Score:2)
Re:AMD does it again... (Score:2)
Someone had to say it... (Score:1, Funny)
Doing it the old fashioned way (Score:2)
Re:Doing it the old fashioned way (Score:2)
Re:Doing it the old fashioned way (Score:2, Informative)
Re:Doing it the old fashioned way (Score:1)
Re:Doing it the old fashioned way (Score:2)
Because you could get graduate students to work on it. Graduate students are sort of like slaves, except that you don't have to feed them like you do slaves.
Speed, speed, speed! (Score:2)
The biggest reason for the design is the node interconnect speed. From the article:
Commercial racks could not
I wonder .. (Score:1)
the one they are using seems pretty old suse distribution
Re:I wonder .. (Score:2)
Re:I wonder .. (Score:2)
Of course, changing the kernel might get you slightly better drivers and improve I/O performance, and perhaps memory allocation, but the linux 2.4 kernel was mature enough that I doubt there are any significant improvements f
Actually, this could be a good design for offices (Score:4, Interesting)
High energy gamma photons? (Score:1)
From now on, I'm carrying a scorpion in my pocket!
MUAHAHAHAHA
6 Months? (Score:5, Interesting)
Regarding their design, I'm somewhat surprised they used an individual power supply for each board. It seems there would be more efficient and smaller power systems available that could power multiple boards at once. It looks like a quarter of the volume of the computer is comprised of power supplies. Plus all that extra heat is thrown into the mix too.
Dan East
Re:6 Months? (Score:1)
I would guess in these types of applications clean power is an absolute must which is another reason to use individual power supplies with more than enough juice on the rails to keep the CPU happy.
Re:6 Months? (Score:2)
Sometimes the measure of efficiency is called "you have X Euros to spend on this project".
While not technically the most efficient, if said mobos+PCU+Power supply cost $250, compared to utilizing a bunch of blade-like units that effectively cost $500 per CPU unit, then you go with the less "efficient" solution.
Sort of like all those render farms we've seen pictures of, where they just have 1000 or so
Re:6 Months? (Score:2)
Re:6 Months? (Score:2, Funny)
Re:6 Months? (Score:2)
It's quite entertaining....
http://xxx.lanl.gov/abs/astro-ph/?9912202 [lanl.gov]
Re:6 Months? (Score:2)
Even now, there aren't any chips that are twice as fast as a 1.8GHz Opteron. At the time, I think 2.0 was the max, and those get expensive, to the point where you are better off spending the money adding nodes than spending more per chip.
Re:6 Months? (Score:3, Informative)
1) is CPU-bound rather than interconnect-bound or disk-bound or memory-bound
2) will take 3 years+ with current technology / budget, and
3) produces no useful intermediate results
At 3 years, you come out even buying current tech and running it for 3 years versus waiting 18 months and buying spending the same money on tech that can do the job in 18 months.
There are few such computations. Note that the
Re:6 Months? (Score:2)
Re:6 Months? (Score:2)
Actually, Moore's law will probably help out with memory access speed. Also, if you're interconnect-bound Moore's law will allow you to keep total CPU power constant while reducing the number of CPUs, and consequently the number of interconnects.
2) will take 3 years+ with current technology / budget, and
I'll definitely agree there... Moore's law isn't THAT fast...
Re:6 Months? (Score:2)
This 'research' regarding optimizing for this effect has already been done...
Here's a google cache of it... [64.233.167.104]
(I searched on the name of a buddy of mine who worked on this paper to find this, which is why the search terms were like that.)
Cheers,
Richard
Great pictures (Score:1, Informative)
Wow... (Score:4, Funny)
I thought we where years away from having to defend ourselves against the machines...
WOW (Score:3, Funny)
SCI interconnect? (Score:1)
Is SCSI P2P used in real world clusters though? How does it compare to SCI or gigabit ethernet? Price? Performance? Status of the project? No idea...
Something else to look for (Score:2)
supermodel (Score:2)
But it lasts only 30 minutes, and has Tom Hanks narrating over the otherwise superb soundsyst
Re:supermodel (Score:2)
Re:supermodel (Score:2)
Re:supermodel (Score:2)
The software that astronomers use for visualisation tend to be either home-grown or else part of very complicated data reduction and analysis packages (eg IRAF, MIRIAD, AIPS++) that nobody in their right mind would want to use if they didn't have to!
Re:supermodel (Score:2)
Neutralinos? (Score:2)
Epicycles. (Score:2)
If the calculations are correct, then Dark Matter accounts for more mass than any single element in the universe, and has and is reacted on by gravity. There should be some of it close by to take a look at... there should be a good deal of it here on earth, as both earth and dark matter have gravity.
I half-suspect that both dark energy and dark matter are unexpected aspects of gravity working are cosmi
I miss the old days... (Score:2)
Re:Occams razor (Score:1)
forces do not just change behavior, when there is a change in behavior it is usually due to another force expressing itself.
Re:Occams razor (Score:2)
I guess this explains Abu Grahib.